/EXTERNAL BLUEPRINT/methylation/K006320_8_lane_gembs

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SAMPLE K006320_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23516872 4861097 20.67 %
NonRefCpG 360493 41808 11.60 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006320_8_lane_gembs_coverage_refCpG.png ./IMG//K006320_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006320_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006320_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006320_8_lane_gembs_quality_refcpg.png ./IMG//K006320_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006320_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3127493 8.85 % 403728 3.79 % 139544 24.73 % 14560 11.45 %
Intermediate (0.3-0.7) 10203002 28.88 % 2084906 19.59 % 171296 30.36 % 29931 23.53 %
Methylated (0.7-1) 21996690 62.27 % 8154212 76.62 % 253370 44.91 % 82693 65.02 %
Median Methylation 0.780 0.860 0.640 0.810