/EXTERNAL BLUEPRINT/K006417_12_lane_gembs/B271.Bisulfite-Seq.DNA_Methylation.EGAX00001364652_12

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SAMPLE K006417_12_lane_gembs LANE B271.Bisulfite-Seq.DNA_Methylation.EGAX00001364652_12

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1228446910 100.00 % 614223455 100.00 % 614223455 100.00 %
General Reads 1199055317 97.61 % 602625021 98.11 % 596430296 97.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3455650 0.28 % 1736912 0.28 % 1718738 0.28 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25935943 2.11 % 9861522 1.61 % 16074421 2.62 %
Bisulfite_reads C2T 616270251 50.17 % 309696242 50.42 % 306574009 49.91 %
Bisulfite_reads G2A 586240716 47.72 % 294665691 47.97 % 291575025 47.47 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 506193917
Average Unique 82.41 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48763945320 38.92 % 18675331094 29.81 % 30088614226 48.03 %
Base Counts Overall C 13360988865 10.66 % 628292382 1.00 % 12732696483 20.32 %
Base Counts Overall G 13522471192 10.79 % 12924539823 20.63 % 597931369 0.95 %
Base Counts Overall T 48369554729 38.60 % 29804718856 47.57 % 18564835873 29.63 %
Base Counts Overall N 1284624714 1.03 % 617910255 0.99 % 666714459 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991973025779817
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 582996564



Mapping Quality

Mapping Quality Histogram
B271.Bisulfite-Seq.DNA_Methylation.EGAX00001364652_12.mapq.png



Read Length

Read Length Reads
101 614223455
101 614223455



Insert Size Plot

Insert Size Histogram
B271.Bisulfite-Seq.DNA_Methylation.EGAX00001364652_12.isize.png