/EXTERNAL BLUEPRINT/mapping_coverage/K006417_12_lane_gembs
BACK
SAMPLE K006417_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1195827212 |
100% |
110266173204 |
100% |
| Mapped |
1182898547 |
98.92 % |
108960378039 |
98.82 % |
| Passed |
1009953857 |
84.46 % |
91492964349 |
82.97 % |
| NotPassed |
172944690 |
14.46 % |
17467413690 |
15.84 % |
| |
|
|
|
|
| LowMAPQ |
148995768 |
12.46 % |
15048572568 |
13.65 % |
| MateUnmapped |
12928665 |
1.08 % |
1305795165 |
1.18 % |
| Duplicate |
3228670 |
0.27 % |
326095670 |
0.30 % |
| BadOrientation |
16 |
0.00 % |
1616 |
0.00 % |
| LargeInsertSize |
4762 |
0.00 % |
480962 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20715474 |
1.73 % |
2092262874 |
1.90 % |
| Unmapped |
12928665 |
1.08 % |
1305795165 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
101996768798 |
100% |
| Passed |
85688343426 |
84.01 % |
| Trimmed |
4477593743 |
4.39 % |
| Clipped |
121050399 |
0.12 % |
| Overlapping |
10382754050 |
10.18 % |
| LowQuality |
1327027180 |
1.30 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |