/EXTERNAL BLUEPRINT/methylation/K006417_12_lane_gembs

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SAMPLE K006417_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26818065 23882929 89.06 %
NonRefCpG 277113 211939 76.48 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006417_12_lane_gembs_coverage_refCpG.png ./IMG//K006417_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006417_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006417_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006417_12_lane_gembs_quality_refcpg.png ./IMG//K006417_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006417_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6081192 11.50 % 5042961 10.29 % 39443 7.46 % 19345 4.40 %
Intermediate (0.3-0.7) 6678229 12.62 % 5653418 11.54 % 78292 14.81 % 52075 11.85 %
Methylated (0.7-1) 40143454 75.88 % 38300517 78.17 % 411087 77.74 % 367986 83.75 %
Median Methylation 0.870 0.870 0.870 0.880