/EXTERNAL BLUEPRINT/K006321_8_lane_gembs/145.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223317_8

BACK

SAMPLE K006321_8_lane_gembs LANE 145.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223317_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 298776478 100.00 % 149388239 100.00 % 149388239 100.00 %
General Reads 294416589 98.54 % 148427788 99.36 % 145988801 97.72 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 2 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4359886 1.46 % 960449 0.64 % 3399437 2.28 %
Bisulfite_reads C2T 149929081 50.18 % 75560240 50.58 % 74368841 49.78 %
Bisulfite_reads G2A 144487511 48.36 % 72867550 48.78 % 71619961 47.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 124284748
Average Unique 83.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11807666312 38.75 % 5292666636 34.73 % 6514999676 42.76 %
Base Counts Overall C 3183576763 10.45 % 153312379 1.01 % 3030264384 19.89 %
Base Counts Overall G 3197953262 10.49 % 3017998106 19.81 % 179955156 1.18 %
Base Counts Overall T 11936900589 39.17 % 6622478183 43.46 % 5314422406 34.88 %
Base Counts Overall N 349103830 1.15 % 151145074 0.99 % 197958756 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 141322060



Mapping Quality

Mapping Quality Histogram
145.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223317_8.mapq.png



Read Length

Read Length Reads
101 149388239
101 149388239



Insert Size Plot

Insert Size Histogram
145.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223317_8.isize.png