/EXTERNAL BLUEPRINT/mapping_coverage/K006321_8_lane_gembs
BACK
SAMPLE K006321_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
290294129 |
100% |
28213299194 |
100% |
| Mapped |
286415791 |
98.66 % |
27821587056 |
98.61 % |
| Passed |
241743957 |
83.28 % |
23309731822 |
82.62 % |
| NotPassed |
44671834 |
15.39 % |
4511855234 |
15.99 % |
| |
|
|
|
|
| LowMAPQ |
33879054 |
11.67 % |
3421784454 |
12.13 % |
| MateUnmapped |
3878338 |
1.34 % |
391712138 |
1.39 % |
| Duplicate |
4125031 |
1.42 % |
416628131 |
1.48 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
1394 |
0.00 % |
140794 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6666355 |
2.30 % |
673301855 |
2.39 % |
| Unmapped |
3878338 |
1.34 % |
391712138 |
1.39 % |
Base Level Counts
| Bases |
# |
% |
| Total |
24347797502 |
100% |
| Passed |
21823446240 |
89.63 % |
| Trimmed |
1137540070 |
4.67 % |
| Clipped |
47826392 |
0.20 % |
| Overlapping |
990239288 |
4.07 % |
| LowQuality |
348745512 |
1.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |