/EXTERNAL BLUEPRINT/methylation/K006321_8_lane_gembs

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SAMPLE K006321_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23399655 3979508 17.01 %
NonRefCpG 368864 33249 9.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006321_8_lane_gembs_coverage_refCpG.png ./IMG//K006321_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006321_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006321_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006321_8_lane_gembs_quality_refcpg.png ./IMG//K006321_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006321_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3267235 9.35 % 362335 4.05 % 149683 25.99 % 13681 12.58 %
Intermediate (0.3-0.7) 10406725 29.78 % 1791073 20.00 % 178624 31.01 % 26321 24.21 %
Methylated (0.7-1) 21265710 60.86 % 6803601 75.96 % 247634 43.00 % 68718 63.21 %
Median Methylation 0.770 0.860 0.620 0.800