/EXTERNAL BLUEPRINT/K006391_K006404_25_lane_gembs

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SAMPLE K006391_K006404_25_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2086010672 100.00 % 1043005336 100.00 % 1043005336 100.00 %
General Reads 2013556492 96.53 % 1009994389 96.84 % 1003562103 96.22 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23405110 1.12 % 11731145 1.12 % 11673965 1.12 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 49049070 2.35 % 21279802 2.04 % 27769268 2.66 %
Bisulfite_reads C2T 1061739122 50.90 % 532570412 51.06 % 529168710 50.73 %
Bisulfite_reads G2A 975222480 46.75 % 489155122 46.90 % 486067358 46.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 823632215
Average Unique 78.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 77546857430 36.45 % 30576754866 28.74 % 46970102564 44.15 %
Base Counts Overall C 27486388192 12.92 % 1538708384 1.45 % 25947679808 24.39 %
Base Counts Overall G 27830028580 13.08 % 26332414618 24.75 % 1497613962 1.41 %
Base Counts Overall T 77378370165 36.37 % 46885081239 44.07 % 30493288926 28.66 %
Base Counts Overall N 2531444177 1.19 % 1053585165 0.99 % 1477859012 1.39 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989722785433299
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 984449983



Mapping Quality

Mapping Quality Histogram
K006391_K006404_25_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006391_K006404_25_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00016.Bisulfite-Seq.DNA_Methylation.EGAX00001345076_10
UMCG00016.Bisulfite-Seq.DNA_Methylation.EGAX00001345062_15