/EXTERNAL BLUEPRINT/K006391_K006404_25_lane_gembs/UMCG00016.Bisulfite-Seq.DNA_Methylation.EGAX00001345062_15

BACK

SAMPLE K006391_K006404_25_lane_gembs LANE UMCG00016.Bisulfite-Seq.DNA_Methylation.EGAX00001345062_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1216067692 100.00 % 608033846 100.00 % 608033846 100.00 %
General Reads 1164429880 95.75 % 583994005 96.05 % 580435875 95.46 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18766759 1.54 % 9405762 1.55 % 9360997 1.54 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32871053 2.70 % 14634079 2.41 % 18236974 3.00 %
Bisulfite_reads C2T 624486776 51.35 % 313223992 51.51 % 311262784 51.19 %
Bisulfite_reads G2A 558709863 45.94 % 280175775 46.08 % 278534088 45.81 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 463699847
Average Unique 76.26 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43324203686 34.93 % 17481768520 28.19 % 25842435166 41.67 %
Base Counts Overall C 17781929309 14.34 % 1070244909 1.73 % 16711684400 26.95 %
Base Counts Overall G 18070602010 14.57 % 17020280420 27.44 % 1050321590 1.69 %
Base Counts Overall T 43215929258 34.84 % 25834413235 41.66 % 17381516023 28.03 %
Base Counts Overall N 1646240321 1.33 % 612745208 0.99 % 1033495113 1.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990088410389344
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 569609858



Mapping Quality

Mapping Quality Histogram
UMCG00016.Bisulfite-Seq.DNA_Methylation.EGAX00001345062_15.mapq.png



Read Length

Read Length Reads
101 608033846
101 608033846



Insert Size Plot

Insert Size Histogram
UMCG00016.Bisulfite-Seq.DNA_Methylation.EGAX00001345062_15.isize.png