/EXTERNAL BLUEPRINT/methylation/K006391_K006404_25_lane_gembs
BACK
SAMPLE K006391_K006404_25_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26919931 |
24861279 |
92.35 % |
| NonRefCpG |
257505 |
196117 |
76.16 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5996508 |
11.28 % |
5491710 |
10.89 % |
44948 |
9.18 % |
24953 |
6.14 % |
| Intermediate (0.3-0.7) |
5724938 |
10.77 % |
5003191 |
9.92 % |
69467 |
14.19 % |
45831 |
11.28 % |
| Methylated (0.7-1) |
41435169 |
77.95 % |
39932458 |
79.19 % |
374975 |
76.62 % |
335519 |
82.58 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.910 |
|
0.920 |
|
0.900 |
|
0.920 |
|