/cemt/mapping_coverage/K005736_K005719_2_lane_gembs
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SAMPLE K005736_K005719_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2706724750 |
100% |
342082678493 |
100% |
| Mapped |
2641088936 |
97.58 % |
332237306393 |
97.12 % |
| Passed |
1906004506 |
70.42 % |
221974641893 |
64.89 % |
| NotPassed |
735084430 |
27.16 % |
110262664500 |
32.23 % |
| |
|
|
|
|
| LowMAPQ |
492395870 |
18.19 % |
73859380500 |
21.59 % |
| MateUnmapped |
65635814 |
2.42 % |
9845372100 |
2.88 % |
| Duplicate |
201827598 |
7.46 % |
30274139700 |
8.85 % |
| BadOrientation |
320 |
0.00 % |
48000 |
0.00 % |
| LargeInsertSize |
27596 |
0.00 % |
4139400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
40833046 |
1.51 % |
6124956900 |
1.79 % |
| Unmapped |
65635814 |
2.42 % |
9845372100 |
2.88 % |
Base Level Counts
| Bases |
# |
% |
| Total |
285785798850 |
100% |
| Passed |
197814211208 |
69.22 % |
| Trimmed |
7227454478 |
2.53 % |
| Clipped |
1554018263 |
0.54 % |
| Overlapping |
62257138694 |
21.78 % |
| LowQuality |
16932976207 |
5.93 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |