/EXTERNAL ENCODE/K005738_K005721_2_lane_gembs

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SAMPLE K005738_K005721_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3773144158 100.00 % 1886572079 100.00 % 1886572079 100.00 %
General Reads 3701259320 98.09 % 1857593355 98.46 % 1843665965 97.73 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22555448 0.60 % 11327188 0.60 % 11228260 0.60 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 49329390 1.31 % 17651536 0.94 % 31677854 1.68 %
Bisulfite_reads C2T 1898033282 50.30 % 952247334 50.48 % 945785948 50.13 %
Bisulfite_reads G2A 1825781486 48.39 % 916673209 48.59 % 909108277 48.19 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1385807424
Average Unique 73.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 221883636704 38.94 % 91754757042 32.21 % 130128879662 45.68 %
Base Counts Overall C 61201481844 10.74 % 3581275578 1.26 % 57620206266 20.23 %
Base Counts Overall G 61939730211 10.87 % 57544124727 20.20 % 4395605484 1.54 %
Base Counts Overall T 220860140017 38.76 % 130065899423 45.66 % 90794240594 31.87 %
Base Counts Overall N 3859779082 0.68 % 1926327159 0.68 % 1933451923 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9926506203462079
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1541012745



Mapping Quality

Mapping Quality Histogram
K005738_K005721_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005738_K005721_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF142GZA_150bp_chastity
ENCFF968GRR_150bp_chastity