/EXTERNAL ENCODE/mapping_coverage/K005738_K005721_2_lane_gembs
BACK
SAMPLE K005738_K005721_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3378491747 |
100% |
420207685537 |
100% |
| Mapped |
3352056811 |
99.22 % |
416242445137 |
99.06 % |
| Passed |
2109113794 |
62.43 % |
229800992587 |
54.69 % |
| NotPassed |
1242943017 |
36.79 % |
186441452550 |
44.37 % |
| |
|
|
|
|
| LowMAPQ |
855073718 |
25.31 % |
128261057700 |
30.52 % |
| MateUnmapped |
26434936 |
0.78 % |
3965240400 |
0.94 % |
| Duplicate |
333184357 |
9.86 % |
49977653550 |
11.89 % |
| BadOrientation |
1810 |
0.00 % |
271500 |
0.00 % |
| LargeInsertSize |
119692 |
0.00 % |
17953800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
54563440 |
1.62 % |
8184516000 |
1.95 % |
| Unmapped |
26434936 |
0.78 % |
3965240400 |
0.94 % |
Base Level Counts
| Bases |
# |
% |
| Total |
316091406300 |
100% |
| Passed |
216351989587 |
68.45 % |
| Trimmed |
8759760806 |
2.77 % |
| Clipped |
717171185 |
0.23 % |
| Overlapping |
85573242528 |
27.07 % |
| LowQuality |
4689242194 |
1.48 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |