/EXTERNAL ENCODE/methylation/K005738_K005721_2_lane_gembs
BACK
SAMPLE K005738_K005721_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27358698 |
24499569 |
89.55 % |
| NonRefCpG |
262717 |
209886 |
79.89 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
13699702 |
25.27 % |
11732971 |
23.17 % |
127231 |
25.36 % |
102447 |
23.64 % |
| Intermediate (0.3-0.7) |
12804647 |
23.62 % |
11812428 |
23.32 % |
135837 |
27.08 % |
111910 |
25.82 % |
| Methylated (0.7-1) |
27705244 |
51.11 % |
27103479 |
53.51 % |
238592 |
47.56 % |
219067 |
50.54 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.740 |
|
0.660 |
|
0.700 |
|