/EXTERNAL KNIH/K006225_1_lane_gembs

BACK

SAMPLE K006225_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1864760384 100.00 % 932380192 100.00 % 932380192 100.00 %
General Reads 1816318210 97.40 % 912992334 97.92 % 903325876 96.88 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10413926 0.56 % 5231205 0.56 % 5182721 0.56 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38028248 2.04 % 14156653 1.52 % 23871595 2.56 %
Bisulfite_reads C2T 937775682 50.29 % 471365388 50.56 % 466410294 50.02 %
Bisulfite_reads G2A 888956454 47.67 % 446858151 47.93 % 442098303 47.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 762313855
Average Unique 81.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75258559387 39.57 % 29628006544 31.15 % 45630552843 47.98 %
Base Counts Overall C 19513920503 10.26 % 922459830 0.97 % 18591460673 19.55 %
Base Counts Overall G 19249825581 10.12 % 18615376734 19.57 % 634448847 0.67 %
Base Counts Overall T 74033921954 38.92 % 44954658742 47.27 % 29079263212 30.58 %
Base Counts Overall N 2149331743 1.13 % 982277734 1.03 % 1167054009 1.23 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991014867620279
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 883399500



Mapping Quality

Mapping Quality Histogram
K006225_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006225_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140004.Bisulfite-Seq.DNA_Methylation.EGAX00001411699.KNIH004-D_2