/EXTERNAL KNIH/mapping_coverage/K006225_1_lane_gembs
BACK
SAMPLE K006225_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1748374558 |
100% |
159860944934 |
100% |
| Mapped |
1717359348 |
98.23 % |
156728408724 |
98.04 % |
| Passed |
1390207139 |
79.51 % |
123686035615 |
77.37 % |
| NotPassed |
327152209 |
18.71 % |
33042373109 |
20.67 % |
| |
|
|
|
|
| LowMAPQ |
233697312 |
13.37 % |
23603428512 |
14.76 % |
| MateUnmapped |
31015210 |
1.77 % |
3132536210 |
1.96 % |
| Duplicate |
67955499 |
3.89 % |
6863505399 |
4.29 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
10666 |
0.00 % |
1077266 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25488714 |
1.46 % |
2574360114 |
1.61 % |
| Unmapped |
31015210 |
1.77 % |
3132536210 |
1.96 % |
Base Level Counts
| Bases |
# |
% |
| Total |
140406348769 |
100% |
| Passed |
114797593772 |
81.76 % |
| Trimmed |
6045163602 |
4.31 % |
| Clipped |
214522651 |
0.15 % |
| Overlapping |
16505790503 |
11.76 % |
| LowQuality |
2843278241 |
2.03 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |