/EXTERNAL KNIH/methylation/K006225_1_lane_gembs

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SAMPLE K006225_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26877290 22874281 85.11 %
NonRefCpG 287373 212440 73.92 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006225_1_lane_gembs_coverage_refCpG.png ./IMG//K006225_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006225_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006225_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006225_1_lane_gembs_quality_refcpg.png ./IMG//K006225_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006225_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6340105 11.97 % 4410163 9.29 % 52887 9.67 % 23225 5.26 %
Intermediate (0.3-0.7) 12154726 22.94 % 10505482 22.13 % 139792 25.55 % 105246 23.85 %
Methylated (0.7-1) 34482171 65.09 % 32549800 68.58 % 354455 64.78 % 312847 70.89 %
Median Methylation 0.800 0.820 0.790 0.820