/EXTERNAL KNIH/K006226_1_lane_gembs

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SAMPLE K006226_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1858683952 100.00 % 929341976 100.00 % 929341976 100.00 %
General Reads 1813560298 97.57 % 910792864 98.00 % 902767434 97.14 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9044711 0.49 % 4539852 0.49 % 4504859 0.48 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36078943 1.94 % 14009260 1.51 % 22069683 2.37 %
Bisulfite_reads C2T 938723876 50.50 % 471422151 50.73 % 467301725 50.28 %
Bisulfite_reads G2A 883881133 47.55 % 443910565 47.77 % 439970568 47.34 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 757477218
Average Unique 81.51 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74128734938 39.10 % 29086397683 30.68 % 45042337255 47.52 %
Base Counts Overall C 20340129629 10.73 % 981136831 1.04 % 19358992798 20.42 %
Base Counts Overall G 20137030292 10.62 % 19461032138 20.53 % 675998154 0.71 %
Base Counts Overall T 72844276784 38.42 % 44261120330 46.69 % 28583156454 30.15 %
Base Counts Overall N 2135591461 1.13 % 1003194570 1.06 % 1132396891 1.19 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990976544241819
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 882109789



Mapping Quality

Mapping Quality Histogram
K006226_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006226_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140005.Bisulfite-Seq.DNA_Methylation.EGAX00001411700.KNIH005-D_2