/EXTERNAL KNIH/K006226_1_lane_gembs/KEP20140005.Bisulfite-Seq.DNA_Methylation.EGAX00001411700.KNIH005-D_2

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SAMPLE K006226_1_lane_gembs LANE KEP20140005.Bisulfite-Seq.DNA_Methylation.EGAX00001411700.KNIH005-D_2

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1858683952	100.00 %	929341976	100.00 %	929341976	100.00 %
General Reads	1813560298	97.57 %	910792864	98.00 %	902767434	97.14 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	9044711	0.49 %	4539852	0.49 %	4504859	0.48 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	36078943	1.94 %	14009260	1.51 %	22069683	2.37 %
Bisulfite_reads C2T	938723876	50.50 %	471422151	50.73 %	467301725	50.28 %
Bisulfite_reads G2A	883881133	47.55 %	443910565	47.77 %	439970568	47.34 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	757477218
Average Unique	81.51 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	74128734938	39.10 %	29086397683	30.68 %	45042337255	47.52 %
Base Counts Overall C	20340129629	10.73 %	981136831	1.04 %	19358992798	20.42 %
Base Counts Overall G	20137030292	10.62 %	19461032138	20.53 %	675998154	0.71 %
Base Counts Overall T	72844276784	38.42 %	44261120330	46.69 %	28583156454	30.15 %
Base Counts Overall N	2135591461	1.13 %	1003194570	1.06 %	1132396891	1.19 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9990976544241819
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	882109789

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	929341976
101	929341976

Insert Size Plot

Insert Size Histogram