/EXTERNAL KNIH/mapping_coverage/K006226_1_lane_gembs
BACK
SAMPLE K006226_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1756095743 |
100% |
159271602713 |
100% |
| Mapped |
1726446517 |
98.31 % |
156277030887 |
98.12 % |
| Passed |
1403426570 |
79.92 % |
123652016240 |
77.64 % |
| NotPassed |
323019947 |
18.39 % |
32625014647 |
20.48 % |
| |
|
|
|
|
| LowMAPQ |
239727956 |
13.65 % |
24212523556 |
15.20 % |
| MateUnmapped |
29649226 |
1.69 % |
2994571826 |
1.88 % |
| Duplicate |
57470771 |
3.27 % |
5804547871 |
3.64 % |
| BadOrientation |
20 |
0.00 % |
2020 |
0.00 % |
| LargeInsertSize |
11868 |
0.00 % |
1198668 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25809332 |
1.47 % |
2606742532 |
1.64 % |
| Unmapped |
29649226 |
1.69 % |
2994571826 |
1.88 % |
Base Level Counts
| Bases |
# |
% |
| Total |
141742008422 |
100% |
| Passed |
114815260166 |
81.00 % |
| Trimmed |
6037713544 |
4.26 % |
| Clipped |
246297240 |
0.17 % |
| Overlapping |
17843694942 |
12.59 % |
| LowQuality |
2799042530 |
1.97 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |