/EXTERNAL KNIH/methylation/K006226_1_lane_gembs

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SAMPLE K006226_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26918649 23622571 87.76 %
NonRefCpG 288080 214330 74.40 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006226_1_lane_gembs_coverage_refCpG.png ./IMG//K006226_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006226_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006226_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006226_1_lane_gembs_quality_refcpg.png ./IMG//K006226_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006226_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6758375 12.73 % 5406604 11.10 % 58756 10.71 % 28080 6.30 %
Intermediate (0.3-0.7) 11608656 21.87 % 10280212 21.12 % 135612 24.71 % 103323 23.17 %
Methylated (0.7-1) 34722431 65.40 % 32999721 67.78 % 354342 64.58 % 314610 70.54 %
Median Methylation 0.810 0.820 0.800 0.820