/EXTERNAL KNIH/K006229_1_lane_gembs

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SAMPLE K006229_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1907806202 100.00 % 953903101 100.00 % 953903101 100.00 %
General Reads 1855420570 97.25 % 933455799 97.86 % 921964771 96.65 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12809374 0.67 % 6442210 0.68 % 6367164 0.67 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 39576258 2.07 % 14005092 1.47 % 25571166 2.68 %
Bisulfite_reads C2T 959086711 50.27 % 482450302 50.58 % 476636409 49.97 %
Bisulfite_reads G2A 909143233 47.65 % 457447707 47.96 % 451695526 47.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 773671495
Average Unique 81.11 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74438891557 38.25 % 29234200065 30.05 % 45204691492 46.46 %
Base Counts Overall C 22016341850 11.31 % 1105968022 1.14 % 20910373828 21.49 %
Base Counts Overall G 21878230974 11.24 % 21166364326 21.75 % 711866648 0.73 %
Base Counts Overall T 73667795849 37.86 % 44686413552 45.93 % 28981382297 29.79 %
Base Counts Overall N 2594972374 1.33 % 1105170337 1.14 % 1489802037 1.53 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987072023457131
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 903345086



Mapping Quality

Mapping Quality Histogram
K006229_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006229_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140007.Bisulfite-Seq.DNA_Methylation.EGAX00001411703.KNIH008-D_2