/EXTERNAL KNIH/K006229_1_lane_gembs/KEP20140007.Bisulfite-Seq.DNA_Methylation.EGAX00001411703.KNIH008-D_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1907806202 | 100.00 % | 953903101 | 100.00 % | 953903101 | 100.00 % |
| General Reads | 1855420570 | 97.25 % | 933455799 | 97.86 % | 921964771 | 96.65 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12809374 | 0.67 % | 6442210 | 0.68 % | 6367164 | 0.67 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 39576258 | 2.07 % | 14005092 | 1.47 % | 25571166 | 2.68 % |
| Bisulfite_reads C2T | 959086711 | 50.27 % | 482450302 | 50.58 % | 476636409 | 49.97 % |
| Bisulfite_reads G2A | 909143233 | 47.65 % | 457447707 | 47.96 % | 451695526 | 47.35 % |
| Concept | Value |
|---|---|
| Unique Fragments | 773671495 |
| Average Unique | 81.11 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 74438891557 | 38.25 % | 29234200065 | 30.05 % | 45204691492 | 46.46 % |
| Base Counts Overall C | 22016341850 | 11.31 % | 1105968022 | 1.14 % | 20910373828 | 21.49 % |
| Base Counts Overall G | 21878230974 | 11.24 % | 21166364326 | 21.75 % | 711866648 | 0.73 % |
| Base Counts Overall T | 73667795849 | 37.86 % | 44686413552 | 45.93 % | 28981382297 | 29.79 % |
| Base Counts Overall N | 2594972374 | 1.33 % | 1105170337 | 1.14 % | 1489802037 | 1.53 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9987072023457131 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 903345086 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 953903101 |
| 101 | 953903101 |
| Insert Size Histogram |
|---|
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