/EXTERNAL KNIH/mapping_coverage/K006229_1_lane_gembs
BACK
SAMPLE K006229_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1799444732 |
100% |
159873004547 |
100% |
| Mapped |
1766658728 |
98.18 % |
156561618143 |
97.93 % |
| Passed |
1436089829 |
79.81 % |
123174159344 |
77.05 % |
| NotPassed |
330568899 |
18.37 % |
33387458799 |
20.88 % |
| |
|
|
|
|
| LowMAPQ |
249692426 |
13.88 % |
25218935026 |
15.77 % |
| MateUnmapped |
32786004 |
1.82 % |
3311386404 |
2.07 % |
| Duplicate |
55981791 |
3.11 % |
5654160891 |
3.54 % |
| BadOrientation |
12 |
0.00 % |
1212 |
0.00 % |
| LargeInsertSize |
13400 |
0.00 % |
1353400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24881270 |
1.38 % |
2513008270 |
1.57 % |
| Unmapped |
32786004 |
1.82 % |
3311386404 |
2.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
145041052121 |
100% |
| Passed |
114479718061 |
78.93 % |
| Trimmed |
6097531786 |
4.20 % |
| Clipped |
227535326 |
0.16 % |
| Overlapping |
21639357451 |
14.92 % |
| LowQuality |
2596909497 |
1.79 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |