/EXTERNAL KNIH/methylation/K006229_1_lane_gembs

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SAMPLE K006229_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26794536 22965372 85.71 %
NonRefCpG 301647 206381 68.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006229_1_lane_gembs_coverage_refCpG.png ./IMG//K006229_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006229_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006229_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006229_1_lane_gembs_quality_refcpg.png ./IMG//K006229_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006229_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7387397 14.04 % 6167640 12.93 % 79035 13.85 % 36231 8.13 %
Intermediate (0.3-0.7) 10509810 19.98 % 8882180 18.63 % 124946 21.89 % 88289 19.82 %
Methylated (0.7-1) 34717295 65.98 % 32632171 68.44 % 366754 64.26 % 321021 72.05 %
Median Methylation 0.810 0.820 0.800 0.830