/EXTERNAL KNIH/K006223_1_lane_gembs

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SAMPLE K006223_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1868913640 100.00 % 934456820 100.00 % 934456820 100.00 %
General Reads 1818843567 97.32 % 914868945 97.90 % 903974622 96.74 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12165885 0.65 % 6116777 0.65 % 6049108 0.65 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37904188 2.03 % 13471098 1.44 % 24433090 2.61 %
Bisulfite_reads C2T 943122995 50.46 % 474334903 50.76 % 468788092 50.17 %
Bisulfite_reads G2A 887886457 47.51 % 446650819 47.80 % 441235638 47.22 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 760184388
Average Unique 81.35 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 72776910374 38.18 % 28315440888 29.71 % 44461469486 46.65 %
Base Counts Overall C 21880858876 11.48 % 1079934066 1.13 % 20800924810 21.82 %
Base Counts Overall G 21751354773 11.41 % 21004140777 22.04 % 747213996 0.78 %
Base Counts Overall T 71943587012 37.74 % 43877673567 46.03 % 28065913445 29.45 %
Base Counts Overall N 2276480245 1.19 % 1037406342 1.09 % 1239073903 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987839712328586
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 886282736



Mapping Quality

Mapping Quality Histogram
K006223_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006223_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140002.Bisulfite-Seq.DNA_Methylation.EGAX00001411697.KNIH002-D_2