/EXTERNAL KNIH/mapping_coverage/K006223_1_lane_gembs
BACK
SAMPLE K006223_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1765754894 |
100% |
161225606187 |
100% |
| Mapped |
1733806843 |
98.19 % |
157998853036 |
98.00 % |
| Passed |
1415318244 |
80.15 % |
125831504537 |
78.05 % |
| NotPassed |
318488599 |
18.04 % |
32167348499 |
19.95 % |
| |
|
|
|
|
| LowMAPQ |
242220278 |
13.72 % |
24464248078 |
15.17 % |
| MateUnmapped |
31948051 |
1.81 % |
3226753151 |
2.00 % |
| Duplicate |
53091753 |
3.01 % |
5362267053 |
3.33 % |
| BadOrientation |
4 |
0.00 % |
404 |
0.00 % |
| LargeInsertSize |
12258 |
0.00 % |
1238058 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23164306 |
1.31 % |
2339594906 |
1.45 % |
| Unmapped |
31948051 |
1.81 % |
3226753151 |
2.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
142942586837 |
100% |
| Passed |
116948442365 |
81.81 % |
| Trimmed |
6081811693 |
4.25 % |
| Clipped |
205507566 |
0.14 % |
| Overlapping |
16905574734 |
11.83 % |
| LowQuality |
2801250479 |
1.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |