/EXTERNAL KNIH/methylation/K006223_1_lane_gembs

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SAMPLE K006223_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26876054 23945966 89.10 %
NonRefCpG 298702 210592 70.50 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006223_1_lane_gembs_coverage_refCpG.png ./IMG//K006223_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006223_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006223_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006223_1_lane_gembs_quality_refcpg.png ./IMG//K006223_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006223_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6617250 12.51 % 5738279 11.68 % 71694 12.66 % 31393 6.98 %
Intermediate (0.3-0.7) 11959959 22.61 % 10634713 21.65 % 145146 25.63 % 109418 24.32 %
Methylated (0.7-1) 34327386 64.89 % 32748213 66.67 % 349453 61.71 % 309013 68.70 %
Median Methylation 0.800 0.810 0.780 0.810