/EXTERNAL KNIH/mapping_coverage/K006228_1_lane_gembs
BACK
SAMPLE K006228_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1720517844 |
100% |
150964243054 |
100% |
| Mapped |
1687757778 |
98.10 % |
147655476388 |
97.81 % |
| Passed |
1386238373 |
80.57 % |
117202016483 |
77.64 % |
| NotPassed |
301519405 |
17.52 % |
30453459905 |
20.17 % |
| |
|
|
|
|
| LowMAPQ |
222958878 |
12.96 % |
22518846678 |
14.92 % |
| MateUnmapped |
32760066 |
1.90 % |
3308766666 |
2.19 % |
| Duplicate |
56931921 |
3.31 % |
5750124021 |
3.81 % |
| BadOrientation |
16 |
0.00 % |
1616 |
0.00 % |
| LargeInsertSize |
10824 |
0.00 % |
1093224 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21617766 |
1.26 % |
2183394366 |
1.45 % |
| Unmapped |
32760066 |
1.90 % |
3308766666 |
2.19 % |
Base Level Counts
| Bases |
# |
% |
| Total |
140006816100 |
100% |
| Passed |
108766940654 |
77.69 % |
| Trimmed |
5851659293 |
4.18 % |
| Clipped |
205484664 |
0.15 % |
| Overlapping |
22599314953 |
16.14 % |
| LowQuality |
2583416536 |
1.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |