/EXTERNAL KNIH/methylation/K006228_1_lane_gembs

BACK

SAMPLE K006228_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26826785 23603633 87.99 %
NonRefCpG 296133 210946 71.23 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006228_1_lane_gembs_coverage_refCpG.png ./IMG//K006228_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006228_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006228_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006228_1_lane_gembs_quality_refcpg.png ./IMG//K006228_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006228_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6826452 12.92 % 5829084 11.99 % 65853 11.73 % 29316 6.57 %
Intermediate (0.3-0.7) 10820457 20.48 % 9452267 19.45 % 126051 22.45 % 91671 20.54 %
Methylated (0.7-1) 35194381 66.60 % 33315507 68.55 % 369666 65.83 % 325394 72.90 %
Median Methylation 0.810 0.820 0.810 0.830