/EXTERNAL CREST/mapping_coverage/K006434_1_lane_gembs
BACK
SAMPLE K006434_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2652693826 |
100% |
175515947474 |
100% |
| Mapped |
2652693826 |
100.00 % |
175515947474 |
100.00 % |
| Passed |
1326550079 |
50.01 % |
140001312654 |
79.77 % |
| NotPassed |
1326143747 |
49.99 % |
35514634820 |
20.23 % |
| |
|
|
|
|
| LowMAPQ |
401662226 |
15.14 % |
35514634820 |
20.23 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
924481521 |
34.85 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
59707583455 |
100% |
| Passed |
54195851813 |
90.77 % |
| Trimmed |
3063209965 |
5.13 % |
| Clipped |
1680424039 |
2.81 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
768097638 |
1.29 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |