/EXTERNAL CREST/methylation/K006434_1_lane_gembs

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SAMPLE K006434_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26052667 18080024 69.40 %
NonRefCpG 328217 123228 37.54 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006434_1_lane_gembs_coverage_refCpG.png ./IMG//K006434_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006434_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006434_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006434_1_lane_gembs_quality_refcpg.png ./IMG//K006434_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006434_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7708149 15.15 % 5638189 14.15 % 142322 23.92 % 37751 11.72 %
Intermediate (0.3-0.7) 12123637 23.82 % 8292607 20.81 % 162910 27.38 % 76700 23.82 %
Methylated (0.7-1) 31061337 61.03 % 25913252 65.04 % 289758 48.70 % 207531 64.45 %
Median Methylation 0.780 0.810 0.680 0.800