/EXTERNAL CREST/mapping_coverage/K006437_1_lane_gembs
BACK
SAMPLE K006437_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1915129378 |
100% |
137954910968 |
100% |
| Mapped |
1915129378 |
100.00 % |
137954910968 |
100.00 % |
| Passed |
1032048637 |
53.89 % |
112234329568 |
81.36 % |
| NotPassed |
883080741 |
46.11 % |
25720581400 |
18.64 % |
| |
|
|
|
|
| LowMAPQ |
257205814 |
13.43 % |
25720581400 |
18.64 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
625874927 |
32.68 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
51778032400 |
100% |
| Passed |
47205489346 |
91.17 % |
| Trimmed |
2364701015 |
4.57 % |
| Clipped |
1445998990 |
2.79 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
761843049 |
1.47 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |