/EXTERNAL CREST/mapping_coverage/K006431_1_lane_gembs
BACK
SAMPLE K006431_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1990354660 |
100% |
141205969271 |
100% |
| Mapped |
1990354660 |
100.00 % |
141205969271 |
100.00 % |
| Passed |
1111965559 |
55.87 % |
110795589771 |
78.46 % |
| NotPassed |
878389101 |
44.13 % |
30410379500 |
21.54 % |
| |
|
|
|
|
| LowMAPQ |
304103795 |
15.28 % |
30410379500 |
21.54 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
574285306 |
28.85 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
55818739900 |
100% |
| Passed |
50639260210 |
90.72 % |
| Trimmed |
2522124500 |
4.52 % |
| Clipped |
1796906780 |
3.22 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
860448410 |
1.54 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |