/EXTERNAL CREST/methylation/K006431_1_lane_gembs

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SAMPLE K006431_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25975302 17806014 68.55 %
NonRefCpG 329721 122481 37.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006431_1_lane_gembs_coverage_refCpG.png ./IMG//K006431_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006431_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006431_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006431_1_lane_gembs_quality_refcpg.png ./IMG//K006431_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006431_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7824617 15.46 % 5796808 14.73 % 151488 25.02 % 37672 11.74 %
Intermediate (0.3-0.7) 11919518 23.56 % 7986325 20.29 % 164840 27.23 % 75857 23.63 %
Methylated (0.7-1) 30856072 60.98 % 25570967 64.98 % 289046 47.75 % 207450 64.63 %
Median Methylation 0.780 0.810 0.670 0.810