/EXTERNAL ENCODE/mapping_coverage/K005711_K005708_2_lane_gembs
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SAMPLE K005711_K005708_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1891049215 |
100% |
233103660557 |
100% |
| Mapped |
1839312501 |
97.26 % |
225876101532 |
96.90 % |
| Passed |
1097758402 |
58.05 % |
126700447807 |
54.35 % |
| NotPassed |
741554099 |
39.21 % |
99175653725 |
42.55 % |
| |
|
|
|
|
| LowMAPQ |
541109628 |
28.61 % |
72076832800 |
30.92 % |
| MateUnmapped |
51736714 |
2.74 % |
7227559025 |
3.10 % |
| Duplicate |
147176809 |
7.78 % |
19843875125 |
8.51 % |
| BadOrientation |
358 |
0.00 % |
47550 |
0.00 % |
| LargeInsertSize |
37118 |
0.00 % |
5005000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
53230186 |
2.81 % |
7249893250 |
3.11 % |
| Unmapped |
51736714 |
2.74 % |
7227559025 |
3.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
146219110925 |
100% |
| Passed |
117949909143 |
80.67 % |
| Trimmed |
4712277182 |
3.22 % |
| Clipped |
1417904401 |
0.97 % |
| Overlapping |
18100758717 |
12.38 % |
| LowQuality |
4038261482 |
2.76 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |