/EXTERNAL ENCODE/K005729_K005715_2_lane_gembs/ENCFF406GDR_125bp_chastity
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1164820856 | 100.00 % | 582410428 | 100.00 % | 582410428 | 100.00 % |
| General Reads | 1122402290 | 96.36 % | 562495009 | 96.58 % | 559907281 | 96.14 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 15094397 | 1.30 % | 7580904 | 1.30 % | 7513493 | 1.29 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 27324169 | 2.35 % | 12334515 | 2.12 % | 14989654 | 2.57 % |
| Bisulfite_reads C2T | 577398458 | 49.57 % | 289383765 | 49.69 % | 288014693 | 49.45 % |
| Bisulfite_reads G2A | 560098229 | 48.08 % | 280692148 | 48.19 % | 279406081 | 47.97 % |
| Concept | Value |
|---|---|
| Unique Fragments | 453547442 |
| Average Unique | 77.87 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 57602510101 | 39.25 % | 22194029284 | 30.24 % | 35408480817 | 48.25 % |
| Base Counts Overall C | 15382958060 | 10.48 % | 916558803 | 1.25 % | 14466399257 | 19.71 % |
| Base Counts Overall G | 15644885946 | 10.66 % | 14430176234 | 19.66 % | 1214709712 | 1.66 % |
| Base Counts Overall T | 56949247200 | 38.80 % | 35257800372 | 48.05 % | 21691446828 | 29.56 % |
| Base Counts Overall N | 1187826549 | 0.81 % | 585149235 | 0.80 % | 602677314 | 0.82 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9855786508102766 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 514591311 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 125 | 582410428 |
| 125 | 582410428 |
| Insert Size Histogram |
|---|
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