/EXTERNAL ENCODE/K005729_K005715_2_lane_gembs

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SAMPLE K005729_K005715_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2259210624 100.00 % 1129605312 100.00 % 1129605312 100.00 %
General Reads 2199852000 97.37 % 1102175797 97.57 % 1097676203 97.17 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16958722 0.75 % 8515576 0.75 % 8443146 0.75 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 42399902 1.88 % 18913939 1.67 % 23485963 2.08 %
Bisulfite_reads C2T 1127227011 49.89 % 564796156 50.00 % 562430855 49.79 %
Bisulfite_reads G2A 1089583711 48.23 % 545895217 48.33 % 543688494 48.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 893347565
Average Unique 79.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 111979760475 39.34 % 43227460395 30.37 % 68752300080 48.30 %
Base Counts Overall C 29503077531 10.36 % 1544596839 1.09 % 27958480692 19.64 %
Base Counts Overall G 29677248272 10.43 % 27707122121 19.47 % 1970126151 1.38 %
Base Counts Overall T 111193450627 39.06 % 68715986872 48.28 % 42477463755 29.84 %
Base Counts Overall N 2307001719 0.81 % 1135103085 0.80 % 1171898634 0.82 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9858894951706517
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1013208952



Mapping Quality

Mapping Quality Histogram
K005729_K005715_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005729_K005715_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF406GDR_125bp_chastity
ENCFF220NMH_125bp_chastity