/EXTERNAL ENCODE/mapping_coverage/K005729_K005715_2_lane_gembs
BACK
SAMPLE K005729_K005715_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1923693557 |
100% |
229877175379 |
100% |
| Mapped |
1899767191 |
98.76 % |
226886379629 |
98.70 % |
| Passed |
1225926017 |
63.73 % |
142656232879 |
62.06 % |
| NotPassed |
673841174 |
35.03 % |
84230146750 |
36.64 % |
| |
|
|
|
|
| LowMAPQ |
337245238 |
17.53 % |
42155654750 |
18.34 % |
| MateUnmapped |
23926366 |
1.24 % |
2990795750 |
1.30 % |
| Duplicate |
280688360 |
14.59 % |
35086045000 |
15.26 % |
| BadOrientation |
128 |
0.00 % |
16000 |
0.00 % |
| LargeInsertSize |
12420 |
0.00 % |
1552500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
55895028 |
2.91 % |
6986878500 |
3.04 % |
| Unmapped |
23926366 |
1.24 % |
2990795750 |
1.30 % |
Base Level Counts
| Bases |
# |
% |
| Total |
153177714125 |
100% |
| Passed |
134030197362 |
87.50 % |
| Trimmed |
5670652449 |
3.70 % |
| Clipped |
625534954 |
0.41 % |
| Overlapping |
9895946292 |
6.46 % |
| LowQuality |
2955383068 |
1.93 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |