/EXTERNAL ENCODE/methylation/K005729_K005715_2_lane_gembs
BACK
SAMPLE K005729_K005715_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27050094 |
23099097 |
85.39 % |
| NonRefCpG |
269157 |
195954 |
72.80 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
23043937 |
43.18 % |
20218715 |
41.96 % |
246926 |
47.99 % |
198186 |
47.46 % |
| Intermediate (0.3-0.7) |
9421848 |
17.65 % |
8016181 |
16.64 % |
98174 |
19.08 % |
69740 |
16.70 % |
| Methylated (0.7-1) |
20902745 |
39.17 % |
19948238 |
41.40 % |
169463 |
32.93 % |
149653 |
35.84 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.450 |
|
0.500 |
|
0.340 |
|
0.360 |
|