/EXTERNAL DEEP/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs/01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422505.01

BACK

SAMPLE K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs LANE 01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422505.01

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	412498914	100.00 %	206249457	100.00 %	206249457	100.00 %
General Reads	396940642	96.23 %	200215685	97.07 %	196724957	95.38 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	73	0.00 %	36	0.00 %	37	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	15558199	3.77 %	6033736	2.93 %	9524463	4.62 %
Bisulfite_reads C2T	202301296	49.04 %	102011109	49.46 %	100290187	48.63 %
Bisulfite_reads G2A	194639419	47.19 %	98204612	47.61 %	96434807	46.76 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	119540108
Average Unique	57.96 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	15299393246	36.72 %	6006149845	28.83 %	9293243401	44.61 %
Base Counts Overall C	5480989517	13.16 %	630711039	3.03 %	4850278478	23.28 %
Base Counts Overall G	5815515408	13.96 %	4980517040	23.91 %	834998368	4.01 %
Base Counts Overall T	14649951030	35.16 %	9006641432	43.24 %	5643309598	27.09 %
Base Counts Overall N	416541113	1.00 %	207175801	0.99 %	209365312	1.01 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	139517812

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	206249457
100	206249457

Insert Size Plot

Insert Size Histogram