/EXTERNAL DEEP/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs/01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422506.01

BACK

SAMPLE K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs LANE 01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422506.01

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	145858344	100.00 %	72929172	100.00 %	72929172	100.00 %
General Reads	140899223	96.60 %	71459898	97.99 %	69439325	95.21 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	2	0.00 %	1	0.00 %	1	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	4959119	3.40 %	1469273	2.01 %	3489846	4.79 %
Bisulfite_reads C2T	71718018	49.17 %	36361357	49.86 %	35356661	48.48 %
Bisulfite_reads G2A	69181207	47.43 %	35098542	48.13 %	34082665	46.73 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	58605443
Average Unique	80.36 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	5724986161	38.86 %	2241321881	30.43 %	3483664280	47.29 %
Base Counts Overall C	1603969716	10.89 %	60433129	0.82 %	1543536587	20.96 %
Base Counts Overall G	1525669595	10.36 %	1489513986	20.22 %	36155609	0.49 %
Base Counts Overall T	5709184169	38.75 %	3498029674	47.49 %	2211154495	30.02 %
Base Counts Overall N	167883103	1.14 %	76547702	1.04 %	91335401	1.24 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	65855732

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	72929172
100	72929172

Insert Size Plot

Insert Size Histogram