/EXTERNAL DEEP/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs/01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422535.01
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 81017240 | 100.00 % | 40508620 | 100.00 % | 40508620 | 100.00 % |
| General Reads | 79745431 | 98.43 % | 39938082 | 98.59 % | 39807349 | 98.27 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1271809 | 1.57 % | 570538 | 1.41 % | 701271 | 1.73 % |
| Bisulfite_reads C2T | 40571076 | 50.08 % | 20317850 | 50.16 % | 20253226 | 50.00 % |
| Bisulfite_reads G2A | 39174355 | 48.35 % | 19620232 | 48.43 % | 19554123 | 48.27 % |
| Concept | Value |
|---|---|
| Unique Fragments | 34404136 |
| Average Unique | 84.93 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 3214064899 | 39.28 % | 1254711435 | 30.67 % | 1959353464 | 47.89 % |
| Base Counts Overall C | 852949872 | 10.42 % | 22453642 | 0.55 % | 830496230 | 20.30 % |
| Base Counts Overall G | 842778416 | 10.30 % | 820745800 | 20.06 % | 22032616 | 0.54 % |
| Base Counts Overall T | 3189796722 | 38.98 % | 1952129268 | 47.71 % | 1237667454 | 30.25 % |
| Base Counts Overall N | 83151331 | 1.02 % | 41330475 | 1.01 % | 41820856 | 1.02 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 38212330 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 100 | 40508620 |
| 100 | 40508620 |
| Insert Size Histogram |
|---|
 |