/EXTERNAL DEEP/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs/01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422536.01

BACK

SAMPLE K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs LANE 01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422536.01

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 114805852 100.00 % 57402926 100.00 % 57402926 100.00 %
General Reads 113098264 98.51 % 56662167 98.71 % 56436097 98.32 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 1707588 1.49 % 740759 1.29 % 966829 1.68 %
Bisulfite_reads C2T 57539870 50.12 % 28826032 50.22 % 28713838 50.02 %
Bisulfite_reads G2A 55558394 48.39 % 27836135 48.49 % 27722259 48.29 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 48825577
Average Unique 85.06 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 4559864535 39.32 % 1783551759 30.76 % 2776312776 47.89 %
Base Counts Overall C 1202556269 10.37 % 30111346 0.52 % 1172444923 20.22 %
Base Counts Overall G 1187922719 10.24 % 1158755608 19.99 % 29167111 0.50 %
Base Counts Overall T 4527561904 39.05 % 2766834754 47.72 % 1760727150 30.37 %
Base Counts Overall N 117485625 1.01 % 58442059 1.01 % 59043566 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 54185927



Mapping Quality

Mapping Quality Histogram
01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422536.01.mapq.png



Read Length

Read Length Reads
100 57402926
100 57402926



Insert Size Plot

Insert Size Histogram
01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422536.01.isize.png