/EXTERNAL DEEP/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs/01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422547.01

BACK

SAMPLE K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs LANE 01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422547.01

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 80571294 100.00 % 40285647 100.00 % 40285647 100.00 %
General Reads 79280137 98.40 % 39707650 98.57 % 39572487 98.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 1291157 1.60 % 577997 1.43 % 713160 1.77 %
Bisulfite_reads C2T 40331586 50.06 % 20199348 50.14 % 20132238 49.97 %
Bisulfite_reads G2A 38948551 48.34 % 19508302 48.42 % 19440249 48.26 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 34205153
Average Unique 84.91 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3195511643 39.27 % 1247484731 30.66 % 1948026912 47.88 %
Base Counts Overall C 849279390 10.44 % 22782420 0.56 % 826496970 20.31 %
Base Counts Overall G 839531531 10.32 % 817163703 20.08 % 22367828 0.55 %
Base Counts Overall T 3170932857 38.97 % 1940339304 47.69 % 1230593553 30.24 %
Base Counts Overall N 82445273 1.01 % 41080189 1.01 % 41365084 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 37990251



Mapping Quality

Mapping Quality Histogram
01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422547.01.mapq.png



Read Length

Read Length Reads
100 40285647
100 40285647



Insert Size Plot

Insert Size Histogram
01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422547.01.isize.png