/EXTERNAL DEEP/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs/01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422552.01

BACK

SAMPLE K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs LANE 01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422552.01

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 228171634 100.00 % 114085817 100.00 % 114085817 100.00 %
General Reads 224064214 98.20 % 112762428 98.84 % 111301786 97.56 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 3 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4107417 1.80 % 1323386 1.16 % 2784031 2.44 %
Bisulfite_reads C2T 114024186 49.97 % 57371855 50.29 % 56652331 49.66 %
Bisulfite_reads G2A 110040031 48.23 % 55390576 48.55 % 54649455 47.90 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 95965482
Average Unique 84.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 9098496968 39.48 % 3578117619 31.05 % 5520379349 47.91 %
Base Counts Overall C 2385987591 10.35 % 61194307 0.53 % 2324793284 20.18 %
Base Counts Overall G 2361929677 10.25 % 2325571591 20.18 % 36358086 0.32 %
Base Counts Overall T 8961575933 38.89 % 5440409199 47.21 % 3521166734 30.56 %
Base Counts Overall N 237344865 1.03 % 117374801 1.02 % 119970064 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 106699661



Mapping Quality

Mapping Quality Histogram
01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422552.01.mapq.png



Read Length

Read Length Reads
100 114085817
100 114085817



Insert Size Plot

Insert Size Histogram
01_HepG2.Bisulfite-Seq.DNA_methylation.EGAX00001422552.01.isize.png