/EXTERNAL DEEP/mapping_coverage/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs
BACK
SAMPLE K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1011672484 |
100% |
96235203329 |
100% |
| Mapped |
996746593 |
98.52 % |
94742614229 |
98.45 % |
| Passed |
743019592 |
73.44 % |
69369914129 |
72.08 % |
| NotPassed |
253727001 |
25.08 % |
25372700100 |
26.37 % |
| |
|
|
|
|
| LowMAPQ |
192031346 |
18.98 % |
19203134600 |
19.95 % |
| MateUnmapped |
14925891 |
1.48 % |
1492589100 |
1.55 % |
| Duplicate |
22815669 |
2.26 % |
2281566900 |
2.37 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
18828 |
0.00 % |
1882800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
38861158 |
3.84 % |
3886115800 |
4.04 % |
| Unmapped |
14925891 |
1.48 % |
1492589100 |
1.55 % |
Base Level Counts
| Bases |
# |
% |
| Total |
74276130200 |
100% |
| Passed |
64447743202 |
86.77 % |
| Trimmed |
3468604575 |
4.67 % |
| Clipped |
260472591 |
0.35 % |
| Overlapping |
4645743480 |
6.25 % |
| LowQuality |
1453566352 |
1.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |