/EXTERNAL DEEP/methylation/K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs
BACK
SAMPLE K006045_K006046_K006047_K006048_K006049_K006049_K006050_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25760473 |
14671803 |
56.95 % |
| NonRefCpG |
344779 |
118855 |
34.47 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
22687737 |
45.06 % |
15939264 |
44.01 % |
337141 |
53.10 % |
167518 |
50.23 % |
| Intermediate (0.3-0.7) |
11797331 |
23.43 % |
7695650 |
21.25 % |
157546 |
24.82 % |
73182 |
21.94 % |
| Methylated (0.7-1) |
15866529 |
31.51 % |
12578818 |
34.73 % |
140177 |
22.08 % |
92791 |
27.82 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.380 |
|
0.420 |
|
0.270 |
|
0.300 |
|