/EXTERNAL DEEP/K006051_K006052_K006053_K006054_K006122_5_lane_gembs/41_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001422636.41

BACK

SAMPLE K006051_K006052_K006053_K006054_K006122_5_lane_gembs LANE 41_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001422636.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	299737152	100.00 %	149868576	100.00 %	149868576	100.00 %
General Reads	292085094	97.45 %	146735633	97.91 %	145349461	96.98 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1533	0.00 %	825	0.00 %	708	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	7650525	2.55 %	3132118	2.09 %	4518407	3.01 %
Bisulfite_reads C2T	148373710	49.50 %	74514904	49.72 %	73858806	49.28 %
Bisulfite_reads G2A	143712917	47.95 %	72221554	48.19 %	71491363	47.70 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	96981644
Average Unique	64.71 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	10900851077	36.01 %	4277435410	28.26 %	6623415667	43.76 %
Base Counts Overall C	4179860751	13.81 %	479651374	3.17 %	3700209377	24.45 %
Base Counts Overall G	4421917990	14.61 %	3817027899	25.22 %	604890091	4.00 %
Base Counts Overall T	10468159352	34.58 %	6412683244	42.37 %	4055476108	26.79 %
Base Counts Overall N	302663182	1.00 %	149928249	0.99 %	152734933	1.01 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.6575293362395048
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	113170080

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	149868576
100	149868576

Insert Size Plot

Insert Size Histogram