/EXTERNAL DEEP/K006051_K006052_K006053_K006054_K006122_5_lane_gembs/41_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001422645.41
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 92955736 | 100.00 % | 46477868 | 100.00 % | 46477868 | 100.00 % |
| General Reads | 92002943 | 98.98 % | 46040019 | 99.06 % | 45962924 | 98.89 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 7 | 0.00 % | 4 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 952786 | 1.02 % | 437845 | 0.94 % | 514941 | 1.11 % |
| Bisulfite_reads C2T | 46854482 | 50.41 % | 23445761 | 50.45 % | 23408721 | 50.37 % |
| Bisulfite_reads G2A | 45148468 | 48.57 % | 22594262 | 48.61 % | 22554206 | 48.53 % |
| Concept | Value |
|---|---|
| Unique Fragments | 38501930 |
| Average Unique | 82.84 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 3565187774 | 39.34 % | 1336277209 | 30.59 % | 2228910565 | 47.48 % |
| Base Counts Overall C | 985930443 | 10.88 % | 34105987 | 0.78 % | 951824456 | 20.28 % |
| Base Counts Overall G | 917581032 | 10.12 % | 885314987 | 20.26 % | 32266045 | 0.69 % |
| Base Counts Overall T | 3498791574 | 38.60 % | 2066092937 | 47.29 % | 1432698637 | 30.52 % |
| Base Counts Overall N | 95693437 | 1.06 % | 47128472 | 1.08 % | 48564965 | 1.03 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 44326906 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 93 | 46477868 |
| 100 | 46477868 |
| Insert Size Histogram |
|---|
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